The boys, aged 13, 14 and 15, were arrested following incidents earlier this week when two lorries and a coach were damaged by objects allegedly thrown from the bridge between junctions 7 and 8 for Reigate, Surrey, on the M25.
The suspects, who have not been named, will appear before South East Surrey Magistrates' Court in Redhill on August 21.
More top news
Thousands of Reading fans prepare to travel to Bradford for their FA Cup quarter final match.
Bournemouth are back on top of the Championship on goal difference after a 5-1 rout away at Craven Cotage
A teenager who admitted attempting to murder a pensioner in Maidstone has been sentenced to 12 years in prison.