A senior security official near the crash site in Assiut said 44 of the dead were children, aged around four to eight.
Two women and a man, who was probably the bus driver, also died.
The state news agency said another 13 people were injured, while a medical source said as many as 28 were injured, 27 of them children.
There have been a string of accidents on Egypt's roads and railways, which have a poor safety record.
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