The boy, who cannot be named for legal reasons, is due to appear at Thames Magistrates' Court today.
Shereka Marsh died at a house in Eastway, in Hackney on Saturday after being shot in the neck.
Two 16-years-olds who had been arrested in connection to the shooting have been released without charge, police said.
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His plan was uncovered by an MI5 operative, who posed as a senior IS official in Syria, the Old Bailey heard.